| MirGeneDB ID | Dan-Novel-10 |
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| Family name |
DAN-NOVEL-10 (all species) |
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| Seed |
CAUAGAU |
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| Species |
Fruit fly (Drosophila ananassae) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
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| Node of Origin (locus) |
D. ananassae
|
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| Node of Origin (family) |
D. ananassae
|
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Genome context
(Dana_caf1) |
scaffold_12903: 559716-559778 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUGCCUGAAAUAUGUAUGUUUUUAAAAUUUUUACGUCUGUCCAAUUAUUUUGUGUUUAUUUUUAUUUCACAACAUAGAUGGCCAGACGUUACAAUUUUUUAAACAAAGCGGCUGUGAAGGAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUGCCUGAAAUAUGUAU--| UU UUU U A U UGUUUAUU
GUUU AAAAUU ACGUCUG CCA UUAU UUG \
CAAA UUUUAA UGCAGAC GGU GAUA AAC U
AAAGGAAGUGUCGGCGAAA^ UU CAU C A C ACUUUAUU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Dan-Novel-10_5p* |
| mirBase accession | None |
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| Sequence |
0- UUACGUCUGUCCAAUUAUUUUG -22
Get sequence
|
|---|
| Mature sequence |
Dan-Novel-10_3p |
| mirBase accession | None |
|---|
| Sequence |
41- ACAUAGAUGGCCAGACGUUACA -63
Get sequence
|
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