| MirGeneDB ID | Dan-Mir-961 |
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| Family name |
MIR-961 (all species) |
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| Seed |
UUGAUCA |
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| Species |
Fruit fly (Drosophila ananassae) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Dme-Mir-961
Dsi-Mir-961
Dya-Mir-961
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| Node of Origin (locus) |
D. melanogaster group
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| Node of Origin (family) |
D. melanogaster group
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Genome context
(Dana_caf1) |
scaffold_12916: 11085018-11085076 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UACAGGAAAGCGACUUAAGUCCGAGCACUAUUUGAUCACUGGUUACUGAGGUUGUUUUGUCAUAAGCUUCGUUUUCUGGCGAUCAAAUACGCUCGACUUUGGGCCCAACCACCUGGCCG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UACAGGAAAGCGACUUA----| C AC A UG UU- U UGUUUU
AGUC GAGC UAUUUGAUC C G AC GAGGU \
UCAG CUCG AUAAACUAG G C UG CUUCG G
GCCGGUCCACCAACCCGGGUU^ - C- C GU UUU - AAUACU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Mature sequence |
Dan-Mir-961_5p |
| mirBase accession | None |
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| Sequence |
0- UUUGAUCACUGGUUACUGAGGU -22
Get sequence
|
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| Star sequence |
Dan-Mir-961_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
37- UUCGUUUUCUGGCGAUCAAAUA -59
Get sequence
|
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