| MirGeneDB ID | Cte-Mir-1996 |
|---|
| Family name |
MIR-1996 (all species) |
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| Seed |
UCAAGUG |
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| Species |
Polychaete worm (Capitella teleta) |
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| MiRBase ID |
cte-mir-1996a
|
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| Paralogues |
|
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| Orthologues |
Efe-Mir-1996-P1
Efe-Mir-1996-P2
Efe-Mir-1996-P3
|
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| Node of Origin (locus) |
Annelida
|
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| Node of Origin (family) |
Annelida
|
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Genome context
(Capitella_teleta_v1.0) |
CAPTEscaffold_158: 126000-126057 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGUGCGAUUUUUUGUCUAGCGUCUCGCUGUCUCAAGUGAGGUCAGUGCUGCUGUGUUUUCUAACAGGGGCACUGUCUUCAAUUGAAACCGUUGGACCGGAACUCACCAUCAAUUUCAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGUGCGAUUUUUUGUCUAGC--| C U C G U G GUGUU
GUCU GC GU UCAA UGAGG CAGUGCU CU U
CAGG UG CA AGUU ACUUC GUCACGG GA U
CACUUUAACUACCACUCAAGGC^ U C A A U G CAAUC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Cte-Mir-1996_5p |
| mirBase accession | MIMAT0009707 |
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| Sequence |
0- CUCAAGUGAGGUCAGUGCUGCU -22
Get sequence
|
|---|
| Star sequence |
Cte-Mir-1996_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
36- GGGCACUGUCUUCAAUUGAAAC -58
Get sequence
|
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