| MirGeneDB ID | Cmi-Novel-2 |
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| Family name |
CHO-NOVEL-2 (all species) |
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| Seed |
UUUUUGC |
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| Species |
Australian ghostshark (Callorhinchus milii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Sto-Novel-2
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| Node of Origin (locus) |
Chondrichthyes
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| Node of Origin (family) |
Chondrichthyes
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Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635864.1: 11626459-11626518 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GACGGCCACCCGCGUGAGCGAUGUGAUGAUGUUUUUGCGACGCGAUGACGUUUUUCGACACAAAUUACAUCAUCACGACGCGAAUUACGUCAUCGCGUUGCACGGUUACACAUCAGUGGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GACGGCCACCCGCGUGA-- U-| A C C UUUUCGA
GCGAUGUGAUGAUGU UUUGCG CG GAUGA GU \
CGUUGCGCUACUGCA AAGCGC GC CUACU CA C
GGGUGACUACACAUUGGCA UU^ A A A UUAAACA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
|
| Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
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| Mature sequence |
Cmi-Novel-2_5p |
| mirBase accession | None |
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| Sequence |
0- GUUUUUGCGACGCGAUGACGU -21
Get sequence
|
|---|
| Star sequence |
Cmi-Novel-2_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- AUCAUCACGACGCGAAUUACGU -60
Get sequence
|
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