| MirGeneDB ID | Cmi-Mir-4541 |
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| Family name |
MIR-4541 (all species) |
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| Seed |
AUAUUUA |
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| Species |
Australian ghostshark (Callorhinchus milii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Pma-Mir-4541
Sto-Mir-4541
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| Node of Origin (locus) |
Vertebrata
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635876.1: 5850052-5850115 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAAACCAAAAUCAUGCUUACUAUCAAAGUUAGCUGGUCUUUGCUAAAUAUUUGUGUGUGUGUGUAAAUUUCACAUAUUUAGCAUGACUGGCUAGCAUUGCUAAGCAACAACGACUAAACUUCCU
Get precursor sequence
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| Structure | 10 20 30 40 50 60
CAAACCAAAAUCAUGCUUAC--| U A UG UU U UGUGUGUG
UA CAA GUUAGC GUC UGCUAAAUAU UG \
AU GUU CGAUCG CAG ACGAUUUAUA AC U
UCCUUCAAAUCAGCAACAACGA^ C A GU U- C UUUAAAUG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
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| Star sequence |
Cmi-Mir-4541_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- AGCUGGUCUUUGCUAAAUAUUUG -23
Get sequence
|
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| Mature sequence |
Cmi-Mir-4541_3p |
| mirBase accession | None |
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| Sequence |
42- CAUAUUUAGCAUGACUGGCUAG -64
Get sequence
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