MirGeneDB 2.1
MirGeneDB ID

Cmi-Mir-29-P2a-v1

Family name MIR-29 (all species)
Seed AGCACCA
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-29-P1b  Cmi-Mir-29-P1d  Cmi-Mir-29-P2a-v2  Cmi-Mir-29-P2b  Cmi-Mir-29-P2d 
Orthologues Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cgi-Mir-29-P2  Cin-Mir-29-P2  Csc-Mir-29-P2  Cte-Mir-29-P2  Esc-Mir-29-P2  Isc-Mir-29-P2  Lch-Mir-29-P2a  Lgi-Mir-29-P2  Loc-Mir-29-P2a  Npo-Mir-29-P2  Obi-Mir-29-P2  Ovu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Sko-Mir-29-P2  Spu-Mir-29-P2  Xbo-Mir-29-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635869.1: 5937584-5937642 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUGUAGGCCUUUGACCCUCUCCAUGAUGACUGAUUUCCUUUGGUGUUCAGAGUCUCCCCACAUUUUCUAGCACCAUUUGAAAUCGGUUGUGUUGAGGGGUCUUUCGUCCGGGACGCAA
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Structure
        10           20        30        40        50         
CCUGUAGGCCUUUGACC---|    C  G UG         CUU       C   GUCUCC 
                    CUCUC AU A  ACUGAUUUC   UGGUGUU AGA      C
                    GGGAG UG U  UGGCUAAAG   ACCACGA UCU      C
AACGCAGGGCCUGCUUUCUG^    U  - GU         UUU       -   UUUACA 
       110       100         90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Star sequence

Cmi-Mir-29-P2a-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- CUGAUUUCCUUUGGUGUUCAGA -22
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Mature sequence

Cmi-Mir-29-P2a-v1_3p
mirBase accessionNone
Sequence 
38- UAGCACCAUUUGAAAUCGGUU -59
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