| MirGeneDB ID | Cmi-Mir-128-P3 |
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| Family name |
MIR-128 (all species) |
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| Seed |
CACAGUG |
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| Species |
Australian ghostshark (Callorhinchus milii) |
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| MiRBase ID |
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| Paralogues |
Cmi-Mir-128-P1
Cmi-Mir-128-P2
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| Orthologues |
Ebu-Mir-128
Lch-Mir-128-P3
Pma-Mir-128-o3
Sto-Mir-128-P3
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
AAVX02045283.1: 2674-2732 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GAGGUGAUGACAUUCCUGGGGGUCCUGGAGAGGGGACCGUUACACUGUAGGAGAGGGAUUGUAGGUCUCACAGUGAACCGGUCUCUGUUCCAGAACCUCUCACCGACAUCAGCACCGGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GAGGUGAUGACAUUCCU--| C A UUA AG GAGGGA
GGGGGU CUGGAG GGGGACCG CACUGU GA \
UCUCCA GACCUU UCUCUGGC GUGACA CU U
CGGCCACGACUACAGCCAC^ A G CAA CU GGAUGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut +1 on both arms. |
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
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| Star sequence |
Cmi-Mir-128-P3_5p* |
| mirBase accession | None |
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| Sequence |
0- AGGGGACCGUUACACUGUAGGA -22
Get sequence
|
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| Mature sequence |
Cmi-Mir-128-P3_3p |
| mirBase accession | None |
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| Sequence |
37- UCACAGUGAACCGGUCUCUGUU -59
Get sequence
|
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