| MirGeneDB ID | Cli-Mir-187 |
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| Family name |
MIR-187 (all species) |
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| Seed |
CGUGUCU |
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| Species |
Rock pigeon (Columba livia) |
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| MiRBase ID |
cli-mir-187
|
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| Paralogues |
|
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| Orthologues |
Aca-Mir-187
Ami-Mir-187
Bta-Mir-187
Cfa-Mir-187
Cpi-Mir-187
Cpo-Mir-187
Dno-Mir-187
Dre-Mir-187
Ete-Mir-187
Gga-Mir-187
Gja-Mir-187
Gmo-Mir-187
Hsa-Mir-187
Lch-Mir-187
Loc-Mir-187
Mal-Mir-187
Mdo-Mir-187
Mml-Mir-187
Mmu-Mir-187
Mun-Mir-187
Oan-Mir-187
Ocu-Mir-187
Rno-Mir-187
Sha-Mir-187
Spt-Mir-187
Tgu-Mir-187
Tni-Mir-187
Xtr-Mir-187
|
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| Node of Origin (locus) |
Osteichthyes
|
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| Node of Origin (family) |
Osteichthyes
|
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Genome context
(colLiv2) |
scaffold231: 68271-68328 [+]
|
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Precursor
(pre-Mir +30nt flank) |
GGGUUUGCUCUAAACUAUUGUGAGACCUCCGGCUACAACACAGGACAUGGGAGCUUUUCUGAACCCUCGUGUCUUGUGUUGCAGCCAGAGGGGCACAUCUUUUCAACCCAGUCUGAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGGUUUGCUCUAAACUAU---| AGA C A AGCUUU
UGUG CCUC GGCU CAACACAGGACAUGGG U
ACAC GGAG CCGA GUUGUGUUCUGUGCUC C
AGAGUCUGACCCAACUUUUCU^ GG- A C CCAAGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut +1 on the 5p arm. The 3' end of the 3p arm is also likely monoadenylated when not monouridylated despite the templated adenosine. |
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| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Cli-Mir-187_5p* |
| mirBase accession | MIMAT0038562 |
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| Sequence |
0- GGCUACAACACAGGACAUGGGA -22
Get sequence
|
|---|
| Mature sequence |
Cli-Mir-187_3p |
| mirBase accession | MIMAT0038563 |
|---|
| Sequence |
36- UCGUGUCUUGUGUUGCAGCCAG -58
Get sequence
|
|---|
