| MirGeneDB ID | Cgi-Novel-6 |
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| Family name |
CGI-NOVEL-19 (all species) |
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| Seed |
GCUAUAA |
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| Species |
Pacific oyster (Crassostrea gigas) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. gigas
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| Node of Origin (family) |
C. gigas
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Genome context
(CGI_GCA_000297895.1) |
scaffold631: 283594-283651 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAUGGAAGCUGGCUUUAGAGUAAAACUGGCAGCUAUAAUGGUUGUCAUUUGUACGGUAUACAGGUAUAAAUGCAACCAUUAUUGCUACUGGUUUAUUCGUCUUUGACAUCACCUGAAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CAUGGAAGCUGGCUUUA---| A UG C U U CGGUA
GAGUAAA C G AGC AUAAUGGUUG CAUUUGUA \
CUUAUUU G C UCG UAUUACCAAC GUAAAUAU U
UAAGUCCACUACAGUUUCUG^ - GU A U - GGACA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
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| Mature sequence |
Cgi-Novel-6_5p |
| mirBase accession | None |
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| Sequence |
0- AGCUAUAAUGGUUGUCAUUUGUA -23
Get sequence
|
|---|
| Star sequence |
Cgi-Novel-6_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- UAAAUGCAACCAUUAUUGCUAC -58
Get sequence
|
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