| MirGeneDB ID | Cgi-Novel-3 |
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| Family name |
CGI-NOVEL-3 (all species) |
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| Seed |
GAGCUCA |
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| Species |
Pacific oyster (Crassostrea gigas) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. gigas
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| Node of Origin (family) |
C. gigas
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Genome context
(CGI_GCA_000297895.1) |
scaffold1094: 247350-247410 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UAGGGAAUUGUGGGGAGACAAGCCGCGGUCAGCCAAUGAUGACAGAGCUGUCUGGGUCUAUAUAAUAGUGAGCUCAGUCUUUAUCGGCGGGCCGCGCUUGUUCAGUUCACCAGUCCGAACA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UAGGGAAUUGUGGGGAG---| C A A U A GU GGGUCU
ACAAGC GCGGUC GCC AUGA GAC GAGCU CU \
UGUUCG CGCCGG CGG UAUU CUG CUCGA GA A
ACAAGCCUGACCACUUGACU^ - G C U A GU UAAUAU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
Yes
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
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| Star sequence |
Cgi-Novel-3_5p* |
| mirBase accession | None |
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| Sequence |
0- AGCCAAUGAUGACAGAGCUGUCU -23
Get sequence
|
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| Mature sequence |
Cgi-Novel-3_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UGAGCUCAGUCUUUAUCGGCGGG -61
Get sequence
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