Mir-9-P19

MirGeneDB ID

Cgi-Mir-9-P19

Family name

MIR-9 (all species)

Seed

CUUUGGU

Species

Pacific oyster (Crassostrea gigas)

MiRBase ID

Paralogues

Cgi-Mir-9-P17 Cgi-Mir-9-P18

Orthologues

Bfl-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cte-Mir-9 Esc-Mir-9 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Npo-Mir-9 Obi-Mir-9 Ovu-Mir-9 Pmi-Mir-9 Spu-Mir-9 Xbo-Mir-9

Node of Origin (locus)

C. gigas

Node of Origin (family)

Bilateria

Genome context
(CGI_GCA_000297895.1)

scaffold42448: 83582-83643 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

CACGUGACCAAGAUGGCGUUGCUAGUUUUGUCUUUGGUUAUCUAGCUGUAUGAUUUCAUUUAAUAUUUCAUAAAGCUAGGUUACCAAAGGCAAAAAUGGCUGUCGAUCCCUGCGUUUGACCA

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Structure

        10        20          30        40        50        60
CACGUGACCAAGAUGGCGUU--|   G             U        G     UUUCAU 
                      GCUA UUUUGUCUUUGGU AUCUAGCU UAUGA      U
                      CGGU AAAACGGAAACCA UGGAUCGA AUACU      U
ACCAGUUUGCGUCCCUAGCUGU^   A             U        A     UUAUAA 
120       110       100        90        80        70

Deep sequencing

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Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

A-	D-	D-	Eg	F-	Gi	He	Ju	L-	Ma	Ma	Pe	Re	Sp	Um	Ea	Fe	Ha	La	Ma

Mature sequence

Cgi-Mir-9-P19_5p

mirBase accession

None

Sequence

0- UCUUUGGUUAUCUAGCUGUAUGA -23

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Star sequence

Cgi-Mir-9-P19_3p*

mirBase accession

None

Sequence

39- AUAAAGCUAGGUUACCAAAGGCA -62

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