| MirGeneDB ID | Cgi-Mir-2-o28 |
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| Family name |
MIR-2 (all species) |
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| Seed |
CACAGCC |
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| Species |
Pacific oyster (Crassostrea gigas) |
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| MiRBase ID |
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| Paralogues |
Cgi-Mir-2-o29
Cgi-Mir-2-o30
Cgi-Mir-2-o31a
Cgi-Mir-2-o31b
Cgi-Mir-2-o32
Cgi-Mir-2-o33
Cgi-Mir-2-o34
Cgi-Mir-2-o35
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| Orthologues |
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| Node of Origin (locus) |
C. gigas
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| Node of Origin (family) |
Protostomia
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Genome context
(CGI_GCA_000297895.1) |
scaffold602: 445001-445057 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UAGUUUUUGAUGGUAAAGCAGAUGAUGAGGCGGUCAAUGUGGGAUGUCGUAGUGCUAUUGUAUUAUCACAGCCAGCAUUGAUGAGCCAGGUCAGAUGCAAACUGCUUGACGGUAUAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UAGUUUUUGAUGGUAAA-- GA GA G-| G A C GUGCU
GCA UGAU GGC GUCAAUGU GG UGU GUA A
CGU ACUG CCG UAGUUACG CC ACA UAU U
CAUAUGGCAGUUCGUCAAA AG GA AG^ A G C UAUGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
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| Motifs | UGUG in loop |
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Tissue expression
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| A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
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| Star sequence |
Cgi-Mir-2-o28_5p* |
| mirBase accession | None |
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| Sequence |
0- CGGUCAAUGUGGGAUGUCGUA -21
Get sequence
|
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| Mature sequence |
Cgi-Mir-2-o28_3p |
| mirBase accession | None |
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| Sequence |
35- UCACAGCCAGCAUUGAUGAGCC -57
Get sequence
|
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