Mir-124-P29

MirGeneDB ID

Cgi-Mir-124-P29

Family name

MIR-124 (all species)

Seed

AAGGCAC

Species

Pacific oyster (Crassostrea gigas)

MiRBase ID

Paralogues

Cgi-Mir-124-P28

Orthologues

Aae-Mir-124 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bla-Mir-124 Cel-Mir-124 Cte-Mir-124 Dan-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dpu-Mir-124 Dsi-Mir-124 Dya-Mir-124 Esc-Mir-124 Hme-Mir-124 Isc-Mir-124 Lan-Mir-124 Npo-Mir-124 Obi-Mir-124 Ovu-Mir-124 Pfl-Mir-124 Pmi-Mir-124 Sko-Mir-124 Spu-Mir-124 Tca-Mir-124 Xbo-Mir-124

Node of Origin (locus)

C. gigas

Node of Origin (family)

Bilateria

Genome context
(CGI_GCA_000297895.1)

scaffold427: 141060-141116 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GAAACAAAGACGAUGAAUUCUUACCUGUUCGUGUUCACCGGGUAGACCUUGAUGGUAUAGAACAAUUAAGGCACGCGGUGAAUGCCAAGGGGGAGAAAAUAUCUUCAUGAAGCCAAA

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Structure

        10           20        30        40        50         
GAAACAAAGACGAUGAA---|    A   G  C          G  AGA       GGUAU 
                    UUCUU CCU UU GUGUUCACCG GU   CCUUGAU     \
                    AAGAG GGG AA CGUAAGUGGC CA   GGAAUUA     A
AAACCGAAGUACUUCUAUAA^    -   G  C          G  C--       ACAAG 
     110       100         90        80          70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

A-	D-	D-	Eg	F-	Gi	He	Ju	L-	Ma	Ma	Pe	Re	Sp	Um	Ea	Fe	Ha	La	Ma

Star sequence

Cgi-Mir-124-P29_5p*

mirBase accession

None

Sequence

0- GUGUUCACCGGGUAGACCUUGAU -23

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Mature sequence

Cgi-Mir-124-P29_3p

mirBase accession

None

Sequence

36- UAAGGCACGCGGUGAAUGCCA -57

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