| MirGeneDB ID | Cgi-Mir-10-P5 |
|---|
| Family name |
MIR-10 (all species) |
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| Seed |
UACCCUG |
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| Species |
Pacific oyster (Crassostrea gigas) |
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| MiRBase ID |
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| Paralogues |
Cgi-Mir-10-P1
Cgi-Mir-10-P2
Cgi-Mir-10-P3
Cgi-Mir-10-P6
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| Orthologues |
Cte-Mir-10-P5
Efe-Mir-10-P5a
Efe-Mir-10-P5b
Lgi-Mir-10-P5
Nve-Mir-10
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| Node of Origin (locus) |
Lophotrochozoa
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| Node of Origin (family) |
Eumetazoa
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Genome context
(CGI_GCA_000297895.1) |
scaffold145: 700580-700637 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCAUCCAUACUCGUAAAAGCCAUGUCUUUUUUACCCUGUAGAACCGAGCGAGUGUAGCCGGUAACACAGCUCGUUUCUGAGGGUUCACAAGACUUUGGAUCAUGCUGCUGAUGUCUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCAUCCAUACUCGUAAAAG- U-| UUUU G C GA UAGC
CCA GUCUU ACCCU UAGAA CGAGC GUG C
GGU CAGAA UGGGA GUCUU GCUCG CAC G
UGUCUGUAGUCGUCGUACUA UU^ CACU - U A- AAUG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
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| Mature sequence |
Cgi-Mir-10-P5_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUACCCUGUAGAACCGAGCGAGUG -24
Get sequence
|
|---|
| Star sequence |
Cgi-Mir-10-P5_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- CAGCUCGUUUCUGAGGGUUCAC -58
Get sequence
|
|---|
