| MirGeneDB ID | Cfa-Novel-9 |
|---|
| Family name |
CFA-NOVEL-9 (all species) |
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| Seed |
GCGGGGG |
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| Species |
Dog (Canis familiaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. familiaris
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| Node of Origin (family) |
C. familiaris
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Genome context
(canFam3_add) |
chr20: 57016350-57016409 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CCUGCUUCCUGAAGGGGUGGGGCCCCAGGAUGCGGGGGGUGGGAGUAGGCUGCCCGGCCUCAGCGCUGCGUCCUGCCCCCCCUCCCGCAGCCGACACCCAUCGGCACGGUCCACACCGAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCUGCUUCCUGAAGGGG---| GCCCCA A U A C CCGGCC
UGGG GG UGCGGGGGG GGG GUAGG UGC U
ACCC CC ACGCCCUCC CCC CGUCC GCG C
CAGCCACACCUGGCACGGCU^ ACAG-- G - C U UCGCGA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | Cfa-Novel-9 is a 5'tailed mirtron. |
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| 3' NTU |
Yes
|
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| Motifs | No |
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Tissue expression
|
| Bl |
Ce |
Co |
He |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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| Mature sequence |
Cfa-Novel-9_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGCGGGGGGUGGGAGUAGGCUGC -23
Get sequence
|
|---|
| Co-mature sequence |
Cfa-Novel-9_3p |
| mirBase accession | None |
|---|
| Sequence |
39- GUCCUGCCCCCCCUCCCGCAG -60
Get sequence
|
|---|
