| MirGeneDB ID | Cfa-Novel-8 |
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| Family name |
CFA-NOVEL-8 (all species) |
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| Seed |
GGGCAGG |
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| Species |
Dog (Canis familiaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. familiaris
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| Node of Origin (family) |
C. familiaris
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Genome context
(canFam3_add) |
chr20: 50060114-50060170 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAGCUGCUGGGGGUGGAGGUGGGGGUGUGAUGGGCAGGGGGUGGCACCCGGGCUGGGCCCAGGGCCUGAUGCCACCUCCCACCCUAGAACAUCUCAUCCAACGUGCUGGAGGAGUCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAGCUGCUGGGGGUGGA- UG GAU-| CA CC UGGG
GG GGGGUGU GGG GGGGGUGGCA CGGGC C
CC CUCUACA CCC CCUCCACCGU GUCCG C
UCUGAGGAGGUCGUGCAA UA AGAU^ AC A- GGAC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | Cfa-Novel-8 is a 5'tailed mirtron. |
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| 3' NTU |
Yes
|
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| Motifs | No |
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Tissue expression
|
| Bl |
Ce |
Co |
He |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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| Mature sequence |
Cfa-Novel-8_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGGGCAGGGGGUGGCACCCGGGC -23
Get sequence
|
|---|
| Co-mature sequence |
Cfa-Novel-8_3p |
| mirBase accession | None |
|---|
| Sequence |
35- CUGAUGCCACCUCCCACCCUAG -57
Get sequence
|
|---|
