| MirGeneDB ID | Cfa-Novel-17 |
|---|
| Family name |
CFA-NOVEL-17 (all species) |
|---|
| Seed |
GGCAGCA |
|---|
| Species |
Dog (Canis familiaris) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
C. familiaris
|
|---|
| Node of Origin (family) |
C. familiaris
|
|---|
Genome context
(canFam3_add) |
chr6: 12879003-12879059 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CACCCUCUGAGGCCCAUCUGGGAGCCCAGCUCACCUGGCAUCUUGCUGUCGUCCUUCUCUUCAGAUGGCAGCAUGAUGCCAGGGCAGCUGGGUACCAGGCACAGCCCUCUCCGUGGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CACCCUCUGAGGCCCAU--| GA CA U CUUC
CUGG GCCCAGCU CCUGGCAUC UGCUGUCGUC U
GACC UGGGUCGA GGACCGUAG ACGACGGUAG C
AGGUGCCUCUCCCGACACG^ A- CG U ACUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Bl |
Ce |
Co |
He |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Cfa-Novel-17_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UCACCUGGCAUCUUGCUGUCGUC -23
Get sequence
|
|---|
| Mature sequence |
Cfa-Novel-17_3p |
| mirBase accession | None |
|---|
| Sequence |
35- UGGCAGCAUGAUGCCAGGGCAG -57
Get sequence
|
|---|
