| MirGeneDB ID | Cfa-Mir-873-v2 |
|---|
| Family name |
MIR-873 (all species) |
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| Seed |
CAGGAAC |
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| Species |
Dog (Canis familiaris) |
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| MiRBase ID |
|
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| Paralogues |
Cfa-Mir-873-v1
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| Orthologues |
Bta-Mir-873-v2
Cpo-Mir-873-v2
Dno-Mir-873-v2
Ete-Mir-873-v2
Hsa-Mir-873-v2
Mdo-Mir-873-v2
Mml-Mir-873-v2
Mmu-Mir-873-v2
Oan-Mir-873-v2
Ocu-Mir-873-v2
Rno-Mir-873-v2
|
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| Node of Origin (locus) |
Mammalia
|
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| Node of Origin (family) |
Mammalia
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Genome context
(canFam3_add) |
chr11: 46838188-46838244 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCCUGCUUAAAAAUAAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGAACAGGAGACUGAUGAGUUCCCGGGAACACCCACAAAUCUUCCUACUCAUUUCUAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCCUGCUUAAAAAUAAG--| UGCAUUUGCA UG G AUUGAA
UUUGUG GGAACU U AGUCUCCU \
AAACAC CCUUGA A UCAGAGGA A
CAUCUUUACUCAUCCUUCU^ CCACAAGGGC GU G CAAGUA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Bl |
Ce |
Co |
He |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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| Mature sequence |
Cfa-Mir-873-v2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- GCAGGAACUUGUGAGUCUCCUA -22
Get sequence
|
|---|
| Star sequence |
Cfa-Mir-873-v2_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- GGAGACUGAUGAGUUCCCGGGA -57
Get sequence
|
|---|
