Mir-26-P1

MirGeneDB ID

Cfa-Mir-26-P1

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-26a-1

Paralogues

Cfa-Mir-26-P2 Cfa-Mir-26-P4

Orthologues

Aca-Mir-26-P1 Ami-Mir-26-P1 Bta-Mir-26-P1 Cli-Mir-26-P1 Cmi-Mir-26-P1 Cpi-Mir-26-P1 Cpo-Mir-26-P1 Dno-Mir-26-P1 Dre-Mir-26-P1a Dre-Mir-26-P1b Ete-Mir-26-P1 Gga-Mir-26-P1 Gja-Mir-26-P1 Gmo-Mir-26-P1a Gmo-Mir-26-P1b Hsa-Mir-26-P1 Lch-Mir-26-P1 Loc-Mir-26-P1 Mal-Mir-26-P1a Mal-Mir-26-P1b Mdo-Mir-26-P1 Mml-Mir-26-P1 Mmu-Mir-26-P1 Mun-Mir-26-P1 Oan-Mir-26-P1 Ocu-Mir-26-P1 Pbv-Mir-26-P1 Pma-Mir-26-o1 Rno-Mir-26-P1 Sha-Mir-26-P1 Spt-Mir-26-P1 Sto-Mir-26-P1 Tgu-Mir-26-P1 Tni-Mir-26-P1a Tni-Mir-26-P1b Xla-Mir-26-P1c Xla-Mir-26-P1d Xtr-Mir-26-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chr23: 7747073-7747133 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACCAAGGCCCUGGCGAAGGCCGUGGCCUCGUUCAAGUAAUCCAGGAUAGGCUGUGCAGGUCCCAAUGGGCCUAUUCUUGGUUACUUGCACGCGGACGCGGGCCUGGACGCUGGCAUCUGGG

Get precursor sequence

Structure

        10          20        30        40        50          
ACCAAGGCCCUGGCGAA-  -|    G  U   U         C          GUGCAGG 
                  GG CCGUG CC CGU CAAGUAAUC AGGAUAGGCU       \
                  CC GGCGC GG GCA GUUCAUUGG UCUUAUCCGG       U
GGGUCUACGGUCGCAGGU  G^    A  C   C         U          GUAACCC 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Bl	Ce	Co	He	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-26-P1_5p

mirBase accession

MIMAT0006595

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

Get sequence

Proposed targets

TargetScanVert: cfa-miR-26a
miRDB: MIMAT0006595

Star sequence

Cfa-Mir-26-P1_3p*

mirBase accession

None

Sequence

39- CCUAUUCUUGGUUACUUGCACG -61

Get sequence