| MirGeneDB ID | Cbr-Novel-1 |
|---|
| Family name |
CBR-NOVEL-1 (all species) |
|---|
| Seed |
UUGAAGU |
|---|
| Species |
Roundworm (Caenorhabditis briggsae) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
C. briggsae
|
|---|
| Node of Origin (family) |
C. briggsae
|
|---|
Genome context
(CB4) |
I: 14504857-14504917 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CAUAUUCCCUAAAAAGCUGGCCACCGGGUCCGGGUUUUGUUUUCCUUCAUACCAUGUCCGAAAUAUAGUUUGAAGUAGAAGAGAGCCCCGAUCUGGUGUCUAGCCAGCUCCUUGUCCUAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAUAUUCCCUAAAAAGC--| C C G C U CAUGUCC
UGG CACCGGGUC GGGUUUU UUUU CUUCA AC \
AUC GUGGUCUAG CCCGAGA AAGA GAAGU UG G
CAAUCCUGUUCCUCGACCG^ U C G U U AUAUAAA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| 01 |
02 |
03 |
04 |
05 |
06 |
07 |
08 |
09 |
10 |
11 |
12 |
13 |
14 |
15 |
16 |
Cb |
Ea |
Ma |
Yo |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Cbr-Novel-1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CGGGUUUUGUUUUCCUUCAUACC -23
Get sequence
|
|---|
| Mature sequence |
Cbr-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UUUGAAGUAGAAGAGAGCCCCGA -61
Get sequence
|
|---|
