| MirGeneDB ID | Bpl-Novel-7-P1 |
|---|
| Family name |
BPL-NOVEL-7 (all species) |
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| Seed |
ACUAAAA |
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| Species |
Rotifer (Brachionus plicatilis) |
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| MiRBase ID |
|
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| Paralogues |
Bpl-Novel-7-P2
|
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| Orthologues |
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| Node of Origin (locus) |
B. plicatilis
|
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| Node of Origin (family) |
B. plicatilis
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Genome context
(Bpl_ASM1027981) |
QEOQ01000670.1: 1235666-1235724 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGUGGAUCAGUGAGUCAACUCGCUUCAGUGCACUAAAAUACGGUAUAGCGGGUAGGUAGUAACGACCGCUGUGCCCUAUUUUAGUACCACUGAACGGGUGCACAGAGCUACGCAAAUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGUGGAUCAGUGAGUCA---| C C- C GUAGGU
ACUCG UUCAGUG ACUAAAAUA GGUAUAGCGG A
UGGGC AAGUCAC UGAUUUUAU CCGUGUCGCC G
UUUAAACGCAUCGAGACACG^ - CA C AGCAAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | The 3' end of the 5p arm may be monouridylated. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Bpl-Novel-7-P1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CACUAAAAUACGGUAUAGCGGG -22
Get sequence
|
|---|
| Star sequence |
Bpl-Novel-7-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- CGCUGUGCCCUAUUUUAGUACCA -59
Get sequence
|
|---|
