| MirGeneDB ID | Bpl-Novel-5 |
|---|
| Family name |
BPL-NOVEL-5 (all species) |
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| Seed |
CAUUCUC |
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| Species |
Rotifer (Brachionus plicatilis) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
B. plicatilis
|
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| Node of Origin (family) |
B. plicatilis
|
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Genome context
(Bpl_ASM1027981) |
QEOQ01000256.1: 676673-676748 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CCAAUUUGAACACGAAUGGUUCUGUUAGAAGCCCCUAUUUUGGAGAAUAAUGAUGGUUAUGAAGUAAACUUUGUAAGUUUAUUCACAUUCUCUUAGAUAGUGGCCUUUUACGGAAAACUAGCGGCUUUUUUAAAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCAAUUUGAACACGAAUGG--| U A C U AA AUGGUUAUGAAGUAA
UUCUGU AGA GCC CUAUUU GGAGAAU UG \
AAGGCA UUU CGG GAUAGA UCUCUUA AC A
UAAAAUUUUUUCGGCGAUCAA^ U C U U C- UUAUUUGAAUGUUUC
130 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
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| Star sequence |
Bpl-Novel-5_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GCCCCUAUUUUGGAGAAUAAUG -22
Get sequence
|
|---|
| Mature sequence |
Bpl-Novel-5_3p |
| mirBase accession | None |
|---|
| Sequence |
54- ACAUUCUCUUAGAUAGUGGCCU -76
Get sequence
|
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