| MirGeneDB ID | Bpl-Novel-3-P2a |
|---|
| Family name |
BPL-NOVEL-3 (all species) |
|---|
| Seed |
CACUGUU |
|---|
| Species |
Rotifer (Brachionus plicatilis) |
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| MiRBase ID |
|
|---|
| Paralogues |
Bpl-Novel-3-P1a1
Bpl-Novel-3-P1a2
Bpl-Novel-3-P1b1
Bpl-Novel-3-P1b2
Bpl-Novel-3-P2b
|
|---|
| Orthologues |
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|---|
| Node of Origin (locus) |
B. plicatilis
|
|---|
| Node of Origin (family) |
B. plicatilis
|
|---|
Genome context
(Bpl_ASM1027981) |
QEOQ01000670.1: 1235286-1235349 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUGUGUCAUCGCUAAAUAAGUAUCAGUGUUUCACUGUUUGUCAAUAGCCUCGCUAGAUGUGUUCCUAGUGCCUGGCUAUUGCAAAUAGUCGAUAUUCUGAACCUGUUUUCAUCAAAUACAAAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUGUGUCAUCGCUAAAUA-- UA U U -| U UC UAGAUGU
AG UCAG GU UC ACUGUUUG CAAUAGCC GC G
UC AGUC UA AG UGAUAAAC GUUAUCGG CG U
AAAAACAUAAACUACUUUUG CA U U C^ - UC UGAUCCU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Bpl-Novel-3-P2a_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCACUGUUUGUCAAUAGCCUCGC -23
Get sequence
|
|---|
| Star sequence |
Bpl-Novel-3-P2a_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
39- GCCUGGCUAUUGCAAAUAGUCGAUA -64
Get sequence
|
|---|
