| MirGeneDB ID | Bpl-Novel-1 |
|---|
| Family name |
BPL-NOVEL-1 (all species) |
|---|
| Seed |
UAUCAGU |
|---|
| Species |
Rotifer (Brachionus plicatilis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
B. plicatilis
|
|---|
| Node of Origin (family) |
B. plicatilis
|
|---|
Genome context
(Bpl_ASM1027981) |
QEOQ01000206.1: 1063707-1063776 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAUUGUCGAACUCAAUACUGAGACUUGUUCCAGUGGUACAGCGCUGAUUAACAGUUGUAAUAUGCUGACUAAUUUCUGUAUCAGUAGCUCUACUACUGAAUCAAGCUCAGUUCUGAUCAUCUUAUCGGCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAUUGUCGAACUCAAUA---| A UUC C - UA UUGUAAUAUG
CUGAG CUUG CAGUGGUA AGC GCUGAU ACAG \
GACUC GAAC GUCAUCAU UCG UGACUA UGUC C
ACGGCUAUUCUACUAGUCUU^ - UAA C A -- UUUAAUCAGU
. 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Bpl-Novel-1_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CAGUGGUACAGCGCUGAUUAACAG -24
Get sequence
|
|---|
| Mature sequence |
Bpl-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
47- GUAUCAGUAGCUCUACUACUGAA -70
Get sequence
|
|---|
