MirGeneDB 2.1
MirGeneDB ID

Bpl-Mir-1-P23

Family name MIR-1 (all species)
Seed GGAAUGU
Species Rotifer (Brachionus plicatilis)
MiRBase ID
Paralogues Bpl-Mir-1-P22 
Orthologues Aae-Mir-1  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Cbr-Mir-1  Cel-Mir-1  Cgi-Mir-1  Cin-Mir-1  Cte-Mir-1  Dan-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Esc-Mir-1  Hme-Mir-1  Isc-Mir-1  Lan-Mir-1  Lgi-Mir-1  Obi-Mir-1  Ovu-Mir-1  Pfl-Mir-1  Pmi-Mir-1  Sko-Mir-1  Spu-Mir-1  Tca-Mir-1  Xbo-Mir-1 
Node of Origin (locus) B. plicatilis
Node of Origin (family) Bilateria
Genome context
(Bpl_ASM1027981)		 QEOQ01000508.1: 2616878-2616960 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GCUUCAAUUUCGUGUAAUUACCCCCAUUGAACGCACUUAUCUACAAGUCCAUAUUGAUUUAAACAAAAGAGAGAUCCAGAUCUCUCAAUUAUGGAAUGUAGUGAAGUGCGUUGAAUAGUUACACAUGUCAUCGUUGGAACUAA
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Structure
        10        20          30        40        50        60        70 
GCUUCAAUUUCGUGUAAUUACCCCC--|  G         AU     AG      UUGAUUUAAACAAAAGA 
                           AUU AACGCACUU  CUACA  UCCAUA                 G
                           UAA UUGCGUGAA  GAUGU  AGGUAU                 A
AAUCAAGGUUGCUACUGUACACAUUGA^  G         GU     A-      UAACUCUCUAGACCUAG 
 140       130       120       110       100         90        80
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Bpl-Mir-1-P23_5p*
mirBase accessionNone
Sequence 
0- ACGCACUUAUCUACAAGUCCAUA -23
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Mature sequence

Bpl-Mir-1-P23_3p
mirBase accessionNone
Sequence 
61- UGGAAUGUAGUGAAGUGCGUUG -83
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