| MirGeneDB ID | Bla-Novel-6-P3 |
|---|
| Family name |
BRA-NOVEL-6 (all species) |
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| Seed |
UACGGGA |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
|---|
| Paralogues |
Bla-Novel-6-P1
Bla-Novel-6-P2a
Bla-Novel-6-P2b
Bla-Novel-6-P4
Bla-Novel-6-P5
|
|---|
| Orthologues |
Bfl-Novel-6
|
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| Node of Origin (locus) |
B. lanceolatum
|
|---|
| Node of Origin (family) |
Branchiostoma
|
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Genome context
(BraLan2) |
Sc0000025: 2401083-2401144 [+]
Ensembl
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|---|
Precursor
(pre-Mir +30nt flank) |
UCACCUUGAUUUGGUUUGGUUUAGAUGGCGAUACGGGACUAUUAAGGACAUGAUUCCCUUCCAUAUUUUCAUGUUCUUAUAAUCUCGCAUCUCUGUUUGAACAUUCAAGCACCAAAUCAUAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UCACCUUGAUUUGGUUUG--| C A C U UUCCCUU
GUUUAGAUGG GAU CGGGA UAU AAGGACAUGA \
CAAGUUUGUC CUA GCUCU AUA UUCUUGUACU C
GAUACUAAACCACGAACUUA^ U C A - UUUAUAC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Bla-Novel-6-P3_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AUACGGGACUAUUAAGGACAUGA -23
Get sequence
|
|---|
| Star sequence |
Bla-Novel-6-P3_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
40- AUGUUCUUAUAAUCUCGCAUCU -62
Get sequence
|
|---|
