| MirGeneDB ID | Bla-Novel-1-P3 |
|---|
| Family name |
BRA-NOVEL-1 (all species) |
|---|
| Seed |
AGUGGUC |
|---|
| Species |
European lancelet (Branchiostoma lanceolatum) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Bla-Novel-1-P1a
Bla-Novel-1-P1b
Bla-Novel-1-P2
|
|---|
| Orthologues |
Bfl-Novel-1-P3
|
|---|
| Node of Origin (locus) |
Branchiostoma
|
|---|
| Node of Origin (family) |
Branchiostoma
|
|---|
Genome context
(BraLan2) |
Sc0000011: 5371505-5371564 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGACACCUGGGACCAUAUGGCACUGAGAGCUAGUGGUCGGUUGAGGUUCGCUGUAAGAUCCAACAAUGCGAAUCUCUGCCUCCCAUUUGCUUUCUCAUGCCACACUCAUCACAAAAAGCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGACACCUGGGACCAUA- CU-| U UC U UGUAAGA
UGGCA GAGAGC AGUGG GGU GAGGUUCGC U
ACCGU CUUUCG UUACC CCG CUCUAAGCG C
ACGAAAAACACUACUCAC ACU^ U CU U UAACAAC
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Bla-Novel-1-P3_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAGUGGUCGGUUGAGGUUCGCU -22
Get sequence
|
|---|
| Star sequence |
Bla-Novel-1-P3_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- CGAAUCUCUGCCUCCCAUUUGC -60
Get sequence
|
|---|
