| MirGeneDB ID | Bla-Mir-4865-v1 |
|---|
| Family name |
MIR-4865 (all species) |
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| Seed |
GUAGAGA |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
Bla-Mir-4865-v2
|
|---|
| Orthologues |
Bfl-Mir-4865-v1
|
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| Node of Origin (locus) |
Branchiostoma
|
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| Node of Origin (family) |
Branchiostoma
|
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Genome context
(BraLan2) |
Sc0000063: 315724-315790 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGAGUGGCUUGUGAACUGUGUGCGCCUGCUGGCUUGUCACUUCCAAUACAUGCUGUGGGCCUACCAUACCGUCCAUGUAGAGAGAGUGACAGGUUGUCGGGCCUCAGACUUGUCUUCAAGUUAUUUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AGAGUGGCUUGUGAACU- G C-| C CCAA CUGUGGGCCU
GU UG GCCUG UGGCUUGUCACUU UACAUG \
CA AC CGGGC GUUGGACAGUGAG AUGUAC A
AUUUAUUGAACUUCUGUU G UC^ U AGAG CUGCCAUACC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Bla-Mir-4865-v1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GGCUUGUCACUUCCAAUACAUG -22
Get sequence
|
|---|
| Mature sequence |
Bla-Mir-4865-v1_3p |
| mirBase accession | None |
|---|
| Sequence |
45- UGUAGAGAGAGUGACAGGUUGU -67
Get sequence
|
|---|
