| MirGeneDB ID | Bla-Mir-4862 |
|---|
| Family name |
MIR-4862 (all species) |
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| Seed |
CGCGUUU |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bfl-Mir-4862
|
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| Node of Origin (locus) |
Branchiostoma
|
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| Node of Origin (family) |
Branchiostoma
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Genome context
(BraLan2) |
Sc0000022: 2101100-2101158 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUAUUUGGAGUCAUUAUCGUUGUCCUGAUCACGCGUUUAUGUCUGCGCCUGUUGUAAAGUUGGAUACAGGUACAGAUGUGAACACGAGAUUGUGACAUUCUCUAACUACGUCCAGCGUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUAUUUGGAGUCAUUAUCGU--| C A C CG UGUAAA
UGUC UGAUC CG GUUUAUGUCUG CCUGU \
ACAG GUUAG GC CAAGUGUAGAC GGACA G
UUGCGACCUGCAUCAAUCUCUU^ U A A AU UAGGUU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Bla-Mir-4862_5p |
| mirBase accession | None |
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| Sequence |
0- ACGCGUUUAUGUCUGCGCCUGU -22
Get sequence
|
|---|
| Star sequence |
Bla-Mir-4862_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- AGGUACAGAUGUGAACACGAGA -59
Get sequence
|
|---|
