| MirGeneDB ID | Bla-Mir-4860 |
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| Family name |
MIR-4860 (all species) |
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| Seed |
GUAGAGA |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Bfl-Mir-4860
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| Node of Origin (locus) |
Branchiostoma
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| Node of Origin (family) |
Branchiostoma
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Genome context
(BraLan2) |
Sc0000063: 316337-316398 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUCUCCUGCUGCUGAGUGGGUGGGACUCUCUGCCUGUCAACGUCUCUGUACAGUGAACAUGAGGCAUGUGUAGAGAUUGUGUGACGGGUAGUGAGCCCCCAACCCUCCUCCUCAUCUCAUCU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CUCUCCUGCUGCUGAGUG----| U A U - - GUGAAC
GG GGG CUC CUGCCUGUCA ACG UCUCUGUACA A
CC CCC GAG GAUGGGCAGU UGU AGAGAUGUGU U
UCUACUCUACUCCUCCUCCCAA^ - - U G U ACGGAG
120 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Star sequence |
Bla-Mir-4860_5p* |
| mirBase accession | None |
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| Sequence |
0- UGCCUGUCAACGUCUCUGUACA -22
Get sequence
|
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| Mature sequence |
Bla-Mir-4860_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UGUAGAGAUUGUGUGACGGGUAGU -62
Get sequence
|
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