| MirGeneDB ID | Bla-Mir-2058 |
|---|
| Family name |
MIR-2058 (all species) |
|---|
| Seed |
GAGAAGU |
|---|
| Species |
European lancelet (Branchiostoma lanceolatum) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bfl-Mir-2058
|
|---|
| Node of Origin (locus) |
Branchiostoma
|
|---|
| Node of Origin (family) |
Branchiostoma
|
|---|
Genome context
(BraLan2) |
Sc0000110: 921563-921621 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
ACGGCGGAGAAAACAUGGAAGCCCGCUAAGUGAGAAGUAAGACUACCAUCCCGUGUGUGCUGUGCCGGGGUGGGGUCUUGCUUCUUCCUUAGCGGCUUUACAACACAACGAUGGACGGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACGGCGGAGAAAACAUG---| C UG A UGUGU
GAAGCC GCUAAG AGAAGUAAGACU CCAUCCCG G
UUUCGG CGAUUC UCUUCGUUCUGG GGUGGGGC C
CGGCAGGUAGCAACACAACA^ - CU - CGUGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | The 3' end of the 5p arm might be monouridylated. |
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Bla-Mir-2058_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGAGAAGUAAGACUACCAUCCCG -23
Get sequence
|
|---|
| Star sequence |
Bla-Mir-2058_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- GGGUGGGGUCUUGCUUCUUCCU -59
Get sequence
|
|---|
