| MirGeneDB ID | Bla-Mir-2056-P1 |
|---|
| Family name |
MIR-2056 (all species) |
|---|
| Seed |
UUCACUG |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
|---|
| Paralogues |
Bla-Mir-2056-P2
|
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| Orthologues |
Bfl-Mir-2056
|
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| Node of Origin (locus) |
B. lanceolatum
|
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| Node of Origin (family) |
Branchiostoma
|
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Genome context
(BraLan2) |
Sc0000086: 325542-325601 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GACACCCCGGCCCCACAGACGACUUGGGCUCAGGUAUGUCUGCGGUGAGGCUGGUAAAACUCGGCAGGUUUCACUGUAGAUCUACCUGCGCUCAUGGCGUCCACAUCCAGCCUCUACUCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GACACCCCGGCCCCACA--| ACU U U GGUAAA
GACG UGGGC CAGGUA GUCUGCGGUGAGGCU A
CUGC ACUCG GUCCAU UAGAUGUCACUUUGG C
UCUCAUCUCCGACCUACAC^ GGU C C ACGGCU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Bla-Mir-2056-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CAGGUAUGUCUGCGGUGAGGCU -22
Get sequence
|
|---|
| Mature sequence |
Bla-Mir-2056-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UUUCACUGUAGAUCUACCUGCG -60
Get sequence
|
|---|
