| MirGeneDB ID | Bge-Novel-1-P1 |
|---|
| Family name |
BGE-NOVEL-1 (all species) |
|---|
| Seed |
GUGAUGU |
|---|
| Species |
Cockroach (Blattella germanica) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Bge-Novel-1-P2
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
B. germanica
|
|---|
| Node of Origin (family) |
B. germanica
|
|---|
Genome context
(Bger_2.0) |
KZ614827.1: 22193-22251 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GUGAAAAGAAUAUAUAACAGUUAUGGGCCAUGUGAUGUGCAUGUGGGCUUUCCGAUAUAUGACAGGUGGCCCACACUUACAUCACUUGCGACCGUAACUGUCUAUUCUUCAACGACUGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUGAAAAGAAUAUAUAA-- GC-| U CA UU GAUAU
CAGUUAUGG CA GUGAUGUG UGUGGGCU CC \
GUCAAUGCC GU CACUACAU ACACCCGG GG A
AGUCAGCAACUUCUUAUCU AGC^ U UC U- ACAGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ad |
Ad |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
Co |
Co |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
No |
No |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Bge-Novel-1-P1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGUGAUGUGCAUGUGGGCUUUCC -23
Get sequence
|
|---|
| Star sequence |
Bge-Novel-1-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- UGGCCCACACUUACAUCACUUGC -59
Get sequence
|
|---|
