| MirGeneDB ID | Bfl-Novel-2 |
|---|
| Family name |
BRA-NOVEL-2 (all species) |
|---|
| Seed |
AAAGGUG |
|---|
| Species |
Florida lancelet (Branchiostoma floridae) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bla-Novel-2
|
|---|
| Node of Origin (locus) |
Branchiostoma
|
|---|
| Node of Origin (family) |
Branchiostoma
|
|---|
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049989.1: 2530565-2530626 [+]
UCSC
|
|---|
Precursor
(pre-Mir +30nt flank) |
CGUCAAAGAGAUCCAACGCUCACCCAGUCAUCUGCUACUGACUCGCUUUAAUGUAACGCCGUUGGAGAGUUAAAGGUGGUCAGUAGUAGGUCACUGUGGGGGUCCGAGCAUCCGUCUGAUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CGUCAAAGAGAUCCAAC--| A - C CG GUAACGC
GCUC CC CAGU AUCUGCUACUGACU CUUUAAU C
UGGG GG GUCA UGGAUGAUGACUGG GAAAUUG G
UGUAGUCUGCCUACGAGCC^ - U C UG AGAGGUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Bfl-Novel-2_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- UCUGCUACUGACUCGCUUUAAU -22
Get sequence
|
|---|
| Mature sequence |
Bfl-Novel-2_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
40- UAAAGGUGGUCAGUAGUAGGUC -62
Get sequence
|
|---|
