| MirGeneDB ID | Bfl-Novel-1-P2 |
|---|
| Family name |
BRA-NOVEL-1 (all species) |
|---|
| Seed |
AGUGGUC |
|---|
| Species |
Florida lancelet (Branchiostoma floridae) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Bfl-Novel-1-P1
Bfl-Novel-1-P3
|
|---|
| Orthologues |
Bla-Novel-1-P2
|
|---|
| Node of Origin (locus) |
Branchiostoma
|
|---|
| Node of Origin (family) |
Branchiostoma
|
|---|
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049990.1: 15554360-15554418 [-]
UCSC
|
|---|
Precursor
(pre-Mir +30nt flank) |
CAAGGAUCUGAUCUAGAGGACCGUAAGGACCAGUGGUCCCACCGUGGCUCGUGAACUCUGGAUACCGAGCCUACGGCUGGACCUCUAGUCAUUGGGUUCUCCUGUGCUACUAUUUAAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAAGGAUCUGAUCUAGA---| G G C U CA - UGAACU
GGACC UAA GAC AG GGUCC CCGU GGCUCG C
CUUGG GUU CUG UC CCAGG GGCA CCGAGC U
CAAAUUUAUCAUCGUGUCCU^ - A A U UC U CAUAGG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Bfl-Novel-1-P2_5p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CAGUGGUCCCACCGUGGCUCG -21
Get sequence
|
|---|
| Co-mature sequence |
Bfl-Novel-1-P2_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- AGCCUACGGCUGGACCUCUAGU -59
Get sequence
|
|---|
