| MirGeneDB ID | Asu-Novel-8 |
|---|
| Family name |
ASU-NOVEL-8 (all species) |
|---|
| Seed |
ACAGUCU |
|---|
| Species |
Large roundworm (Ascaris suum) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
A. suum
|
|---|
| Node of Origin (family) |
A. suum
|
|---|
Genome context
(ASU_PRJNA80881_plustraces) |
Scaffold656: 229799-229855 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUGGCCGGUAAGGUGAAGUUCAGUCCGCUGUACAGUCUCGAGGACGAACUAUGUGCAGGAGGACAUUUUCAUCCUCGAGACUGUGCAACGAACUGAACUUGUUUCCUUUGACAGAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUGGCCGGUAAGGUGAA--| C C C CU UGCA
GUUCAGU CG UGUACAGUCUCGAGGA GAA AUG G
CAAGUCA GC ACGUGUCAGAGCUCCU CUU UAC G
UAAGACAGUUUCCUUUGUU^ A A A U- AGGA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| 0h |
11 |
12 |
24 |
46 |
64 |
6d |
7d |
8d |
96 |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Asu-Novel-8_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UACAGUCUCGAGGACGAACUAUG -23
Get sequence
|
|---|
| Star sequence |
Asu-Novel-8_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- UUUUCAUCCUCGAGACUGUGCA -57
Get sequence
|
|---|
