| MirGeneDB ID | Asu-Mir-87-o3 |
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| Family name |
MIR-87 (all species) |
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| Seed |
UGAGCAA |
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| Species |
Large roundworm (Ascaris suum) |
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| MiRBase ID |
asu-mir-87a
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| Paralogues |
Asu-Mir-87-o4
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| Orthologues |
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| Node of Origin (locus) |
A. suum
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| Node of Origin (family) |
Protostomia
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Genome context
(ASU_PRJNA80881_plustraces) |
Scaffold253: 297752-297814 [-]
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Precursor
(pre-Mir +30nt flank) |
GCAUUGUGCGCGAAGCGGAUAUCCGCCACUCCGCCUGACACUAGGUCUCAACCUCUGUUGAUUUGAGCAGGUGAGCAAAGUCUCAGGUGUUGUGGCGGCCUUCAUCCAUCCUUCGCAGCCGUU
Get precursor sequence
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| Structure | 10 20 30 40 50 60
GCAUUGUGCGCGAAGCG---| UAU UC C AG U A CUGUUG
GA CCGCCAC CGCCUGA ACU G CUCA CCU A
CU GGCGGUG GUGGACU UGA C GAGU GGA U
UUGCCGACGCUUCCUACCUA^ UCC UU C AA - - CGAGUU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| 0h |
11 |
12 |
24 |
46 |
64 |
6d |
7d |
8d |
96 |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
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| Star sequence |
Asu-Mir-87-o3_5p* |
| mirBase accession | MIMAT0021481 |
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| Sequence |
0- CCGCCUGACACUAGGUCUCAACCU -24
Get sequence
|
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| Mature sequence |
Asu-Mir-87-o3_3p |
| mirBase accession | MIMAT0021482 |
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| Sequence |
40- GUGAGCAAAGUCUCAGGUGUUGU -63
Get sequence
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