| MirGeneDB ID | Aqu-Mir-2014-P2 |
|---|
| Family name |
MIR-2014 (all species) |
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| Seed |
AGAUUGG |
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| Species |
Amphimedon (Amphimedon queenslandica) |
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| MiRBase ID |
aqu-mir-2016
|
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| Paralogues |
Aqu-Mir-2014-P1
|
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| Orthologues |
Emu-Mir-2014
|
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| Node of Origin (locus) |
A. queenslandica
|
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| Node of Origin (family) |
Demospongiae
|
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Genome context
(GCF_000090795.1_v1.0_SPONGE) |
NW_003546250.1: 90534-90645 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAGGGUCUUGAGGUGAUUCAAGAGGCACUGUAGAUUGGGCUUGGUCGGCAGAUGAAUAAAAGAGAUUAAGUUUUUGUCCUUUUUCAAAAGAAGACACUAGCUUGAUGCAACUCUUAAAUCUGCUGUCCAGUCUUAAUCUACAGGGCAGACAGUCCUCAGCAGUUCCAUUAGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70 80
AAGGGUCUUGAGGUGAUUCAAGAG--| A C U UGAAUAAAAGAGAUUAAGUUUUUGUCCUUUUU
GC CUGUAGAUUGGG UUGG CGGCAGA C
CG GACAUCUAAUUC GACC GUCGUCU A
UGAUUACCUUGACGACUCCUGACAGA^ G U U AAAUUCUCAACGUAGUUCGAUCACAGAAGAAA
170 160 150 140 130 120 110 100 90 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Aqu-Mir-2014-P2_5p |
| mirBase accession | MIMAT0009690 |
|---|
| Sequence |
0- UAGAUUGGGCUUGGUCGGCAGA -22
Get sequence
|
|---|
| Star sequence |
Aqu-Mir-2014-P2_3p* |
| mirBase accession | MIMAT0009691 |
|---|
| Sequence |
90- UGCUGUCCAGUCUUAAUCUACA -112
Get sequence
|
|---|
